STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0100PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_0137 HD domain protein. (392 aa)    
Predicted Functional Partners:
Swoo_0806
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: sse:Ssed_3776 diguanylate cyclase.
   
 0.523
Swoo_2684
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: saz:Sama_0619 response regulator receiver protein.
 
   
 0.516
Swoo_3131
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_1520 GGDEF domain-like protein.
 
 
 
 0.506
Swoo_0101
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_0138 paraquat-inducible protein A.
       0.505
Swoo_2531
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_2077 diguanylate cyclase.
 
 
   0.500
Swoo_0439
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_4169 diguanylate cyclase.
 
 
 0.491
Swoo_4329
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_0621 diguanylate cyclase.
 
 
 
 0.483
Swoo_4119
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: saz:Sama_0583 diguanylate cyclase.
  
 
 
 0.480
Swoo_2547
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: sse:Ssed_2053 putative diguanylate phosphodiesterase.
 
 
 0.477
Swoo_2828
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbf:CLI_1295 putative sensory box-containing diguanylate cyclase.
 
   
 0.465
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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