Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0102PFAM: ThiJ/PfpI domain protein; KEGG: sse:Ssed_0140 ThiJ/PfpI domain protein. (227 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.494
Swoo_0101
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_0138 paraquat-inducible protein A.
       0.476
Swoo_0384
PFAM: isochorismatase hydrolase; KEGG: cps:CPS_0771 isochorismatase family protein.
 
    0.464
Swoo_4494
KEGG: sbl:Sbal_3792 hypothetical protein.
  
     0.461
Swoo_0103
Hypothetical protein.
       0.452
Swoo_0874
PFAM: isochorismatase hydrolase; KEGG: ana:alr2122 hypothetical protein.
 
    0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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