STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0108Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: spl:Spea_4077 peptidase M24. (388 aa)    
Predicted Functional Partners:
Swoo_0109
PFAM: Asp/Glu/hydantoin racemase; KEGG: spl:Spea_4076 Asp/Glu racemase.
 
     0.903
Swoo_0816
KEGG: vha:VIBHAR_05507 hypothetical protein.
  
     0.730
Swoo_0814
PFAM: peptidase M19 renal dipeptidase; KEGG: vha:VIBHAR_05502 hypothetical protein.
 
  
 0.665
Swoo_0110
PFAM: protein of unknown function DUF6 transmembrane; KEGG: spl:Spea_4075 protein of unknown function DUF6 transmembrane.
       0.491
Swoo_1137
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sse:Ssed_1068 2-ketoglutarate: NADP oxidoreductase, alpha subunit.
     
 0.477
trpF
PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sse:Ssed_1683 indole-3-glycerol-phosphate synthase, phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
  
 0.469
Swoo_0105
TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: spl:Spea_4080 diaminopropionate ammonia-lyase.
 
  
 0.455
Swoo_0107
PFAM: YheO domain protein; KEGG: spl:Spea_4078 YheO domain protein.
 
     0.435
Swoo_0789
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_3795 major facilitator superfamily MFS_1.
  
     0.431
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.