Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_0110PFAM: protein of unknown function DUF6 transmembrane; KEGG: spl:Spea_4075 protein of unknown function DUF6 transmembrane. (326 aa)    
Predicted Functional Partners:
Swoo_0109
PFAM: Asp/Glu/hydantoin racemase; KEGG: spl:Spea_4076 Asp/Glu racemase.
       0.642
Swoo_0111
PFAM: protein of unknown function DUF6 transmembrane; KEGG: spl:Spea_0499 protein of unknown function DUF6 transmembrane.
 
    
0.593
Swoo_0112
Amidohydrolase; KEGG: spl:Spea_4074 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20.
  
    0.495
Swoo_0108
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: spl:Spea_4077 peptidase M24.
       0.491
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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