Swoo_0124 protein (Shewanella woodyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Swoo_0124

PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A. (679 aa)

Predicted Functional Partners:

Swoo_0121

0.503

htpG

0.492

dnaJ

0.487

Swoo_1797

0.475

Your Current Organism:

Shewanella woodyi

NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Swoo_0121	Swoo_0124	Swoo_0121	Swoo_0124	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase.	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	0.503
Swoo_0121	Swoo_1797	Swoo_0121	Swoo_1797	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase.	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	0.975
Swoo_0124	Swoo_0121	Swoo_0124	Swoo_0121	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase.	0.503
Swoo_0124	Swoo_1797	Swoo_0124	Swoo_1797	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	0.475
Swoo_0124	dnaJ	Swoo_0124	Swoo_3582	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.487
Swoo_0124	htpG	Swoo_0124	Swoo_1796	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	0.492
Swoo_1797	Swoo_0121	Swoo_1797	Swoo_0121	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sse:Ssed_0142 glutathione-disulfide reductase.	0.975
Swoo_1797	Swoo_0124	Swoo_1797	Swoo_0124	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	0.475
Swoo_1797	dnaJ	Swoo_1797	Swoo_3582	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.744
Swoo_1797	htpG	Swoo_1797	Swoo_1796	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	0.893
dnaJ	Swoo_0124	Swoo_3582	Swoo_0124	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	0.487
dnaJ	Swoo_1797	Swoo_3582	Swoo_1797	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	0.744
dnaJ	htpG	Swoo_3582	Swoo_1796	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	0.983
htpG	Swoo_0124	Swoo_1796	Swoo_0124	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sse:Ssed_0145 oligopeptidase A.	0.492
htpG	Swoo_1797	Swoo_1796	Swoo_1797	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	PFAM: Thioredoxin domain; KEGG: sse:Ssed_2848 thioredoxin domain protein.	0.893
htpG	dnaJ	Swoo_1796	Swoo_3582	Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.983

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About