Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0125PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase. (374 aa)    
Predicted Functional Partners:
Swoo_3780
KEGG: sse:Ssed_3881 putative aliphatic amidase expression-regulating protein.
   
    0.510
Swoo_4040
KEGG: mva:Mvan_0652 regulatory protein.
   
    0.510
Swoo_0126
KEGG: sse:Ssed_0147 hypothetical protein.
       0.485
Swoo_4036
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cps:CPS_1462 hypothetical protein.
  
     0.443
Swoo_2950
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1414 (2Fe-2S)-binding domain protein.
  
  
 0.440
Swoo_0874
PFAM: isochorismatase hydrolase; KEGG: ana:alr2122 hypothetical protein.
 
  
 0.428
Swoo_4494
KEGG: sbl:Sbal_3792 hypothetical protein.
  
     0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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