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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0126KEGG: sse:Ssed_0147 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Swoo_1423
KEGG: sse:Ssed_3202 erythronolide synthase; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase.
  
 
 0.776
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
    0.644
Swoo_1421
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sse:Ssed_3204 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.561
Swoo_0125
PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase.
       0.485
Swoo_1422
TIGRFAM: PfaB family protein; KEGG: sse:Ssed_3203 omega-3 polyunsaturated fatty acid synthase PfaB.
   
 
 0.481
Swoo_1036
KEGG: sdn:Sden_3016 (acyl-carrier-protein) S-malonyltransferase.
  
 
 0.427
Swoo_2041
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sse:Ssed_2625 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.427
Swoo_2140
PFAM: NAD-glutamate dehydrogenase; KEGG: sse:Ssed_2476 NAD-glutamate dehydrogenase.
  
    0.423
Swoo_3446
PFAM: YfaZ family protein; KEGG: sse:Ssed_3297 YfaZ family protein.
  
     0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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