STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0135Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2491 response regulator receiver protein. (391 aa)    
Predicted Functional Partners:
Swoo_2358
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: smd:Smed_5741 helix-turn-helix-domain containing protein AraC type.
  
     0.668
Swoo_2093
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbn:Sbal195_3318 transcriptional regulator, AraC family.
  
     0.614
Swoo_4869
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: slo:Shew_3785 transcriptional regulator, AraC family.
 
 
 0.601
Swoo_4117
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_0616 transcriptional regulator, AraC family.
  
     0.518
Swoo_4268
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0701 helix-turn-helix-domain containing protein, AraC type.
  
     0.479
Swoo_2795
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sse:Ssed_1801 transcriptional regulator, AraC family.
  
     0.468
Swoo_0134
PFAM: AbgT putative transporter; KEGG: sse:Ssed_0156 AbgT putative transporter.
       0.465
Swoo_0136
PFAM: peptidase S45 penicillin amidase; KEGG: mxa:MXAN_2906 penicillin acylase family protein.
       0.441
Swoo_2942
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_1666 helix-turn-helix-domain containing protein, AraC type.
  
     0.440
Swoo_1072
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_3075 transcriptional regulator, AraC family.
  
     0.424
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.