Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0145KEGG: sse:Ssed_0165 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Swoo_0146
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_1680 metal dependent phosphohydrolase.
       0.556
Swoo_0028
KEGG: hch:HCH_00711 hypothetical protein.
  
     0.553
Swoo_3901
SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase.
  
     0.531
Swoo_2503
KEGG: hch:HCH_06118 hypothetical protein.
  
     0.455
Swoo_3628
KEGG: sde:Sde_1498 hypothetical protein.
  
     0.447
Swoo_3316
KEGG: sse:Ssed_1338 hypothetical protein.
  
     0.437
Swoo_0007
PFAM: Na-Ca exchanger/integrin-beta4; LVIVD repeat protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4.
  
     0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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