STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0154PFAM: sulfatase; KEGG: sse:Ssed_0174 sulfatase. (656 aa)    
Predicted Functional Partners:
Swoo_0153
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sse:Ssed_0173 RNA binding S1 domain protein.
       0.480
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
  
  
 0.476
Swoo_3010
PFAM: histidine kinase A domain protein; KEGG: vfi:VFA0265 sensory transduction protein kinase.
 
     0.453
Swoo_1973
PFAM: Rhodanese domain protein; KEGG: sse:Ssed_2660 rhodanese domain protein; Belongs to the UPF0176 family.
     
 0.440
Swoo_0136
PFAM: peptidase S45 penicillin amidase; KEGG: mxa:MXAN_2906 penicillin acylase family protein.
     
 0.421
Swoo_3041
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9 subtilisin propeptide; KEGG: sse:Ssed_1611 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
  
 0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.