STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0174KEGG: saz:Sama_3487 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Swoo_0173
KEGG: sse:Ssed_0193 hypothetical protein.
 
     0.747
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.724
Swoo_0172
KEGG: sse:Ssed_0192 hypothetical protein.
 
     0.677
Swoo_4613
KEGG: ilo:IL0249 hypothetical protein.
  
     0.667
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.665
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.640
Swoo_0171
PFAM: cytochrome oxidase assembly; KEGG: sse:Ssed_0191 cytochrome oxidase assembly.
 
     0.584
Swoo_1810
KEGG: sse:Ssed_2834 hypothetical protein.
  
     0.578
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
  
     0.547
Swoo_1168
KEGG: sse:Ssed_1086 general secretion pathway protein B.
  
     0.520
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.