STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0183Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0203 conserved hypothetical AraC-type transcriptional regulator. (336 aa)    
Predicted Functional Partners:
Swoo_4268
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0701 helix-turn-helix-domain containing protein, AraC type.
  
     0.770
Swoo_4360
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0593 putative transcriptional regulator.
  
     0.767
Swoo_2902
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_1656 transcriptional regulator, AraC family.
  
     0.764
Swoo_2942
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_1666 helix-turn-helix-domain containing protein, AraC type.
  
     0.758
Swoo_0184
KEGG: sse:Ssed_0204 putative permease of the major facilitator superfamily.
       0.531
Swoo_0185
KEGG: sse:Ssed_0205 putative multidrug resistance efflux pump.
  
    0.531
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.