Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Swoo_0185KEGG: sse:Ssed_0205 putative multidrug resistance efflux pump. (406 aa)    
Predicted Functional Partners:
Swoo_0184
KEGG: sse:Ssed_0204 putative permease of the major facilitator superfamily.
       0.824
Swoo_4522
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_0453 drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.810
Swoo_4521
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0452 secretion protein HlyD family protein.
  
     0.738
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
     0.680
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
  
     0.679
Swoo_4394
PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein.
 
 
 0.665
Swoo_0474
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_4142 type I secretion outer membrane protein, TolC family.
 
 
 0.663
Swoo_4195
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_0774 type I secretion outer membrane protein, TolC family.
  
 
 0.602
Swoo_0554
KEGG: sse:Ssed_4083 outer membrane efflux family protein, putative.
  
 
 0.598
Swoo_0665
PFAM: outer membrane efflux protein; KEGG: sse:Ssed_3870 Co/Zn/Cd efflux system component.
  
 
 0.598
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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