Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0187Globin; KEGG: sse:Ssed_0207 globin; Belongs to the globin family. (137 aa)    
Predicted Functional Partners:
Swoo_0492
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
  
  
 0.827
Swoo_0188
KEGG: sse:Ssed_0208 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.552
Swoo_1043
PFAM: Protein of unknown function DUF1971; KEGG: slo:Shew_0910 hypothetical protein.
  
  
 0.495
Swoo_0186
TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein; KEGG: spl:Spea_3267 diguanylate cyclase.
  
    0.451
Swoo_1875
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit.
  
  
 0.432
Swoo_0559
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VVA0893 methyl-accepting chemotaxis protein.
 
      0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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