STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0191KEGG: sse:Ssed_0212 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Swoo_0190
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_0211 membrane-fusion protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.936
Swoo_0189
TIGRFAM: heavy metal efflux pump, CzcA family; KEGG: sse:Ssed_0210 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.826
Swoo_0556
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sse:Ssed_4081 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.642
Swoo_0192
KEGG: sse:Ssed_0213 hypothetical protein.
  
    0.434
Swoo_0193
KEGG: sse:Ssed_0214 hypothetical protein; Belongs to the UPF0319 family.
  
    0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.