Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0198TIGRFAM: YD repeat protein; PFAM: Fibronectin type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1180 YD repeat protein. (3333 aa)    
Predicted Functional Partners:
Swoo_0197
Hypothetical protein.
       0.773
Swoo_2719
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; chitinase domain protein; SMART: chitinase II; KEGG: sbl:Sbal_2491 chitinase.
 
 
 0.717
Swoo_1920
PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1517 GCN5-related N-acetyltransferase.
  
     0.563
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
   
    0.441
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
   
    0.441
Swoo_2508
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: asa:ASA_1311 rhs family protein.
  
     0.439
Swoo_2660
KEGG: spl:Spea_3159 hydrolase (secreted protein).
 
   
 0.439
Swoo_1859
PFAM: Forkhead-associated protein; KEGG: cps:CPS_0998 FHA domain protein.
 
    0.428
Swoo_3366
KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like.
  
     0.419
Swoo_1187
KEGG: sdn:Sden_1870 hypothetical protein.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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