STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0210Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: swi:Swit_0986 helix-turn-helix-domain containing protein, AraC type. (330 aa)    
Predicted Functional Partners:
Swoo_0212
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psb:Psyr_0007 aliphatic nitrilase.
 
     0.735
Swoo_0211
KEGG: psb:Psyr_0006 putative phenylacetaldoxime dehydratase.
 
     0.728
Swoo_0213
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0989 TonB-dependent receptor.
       0.683
Swoo_0206
TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_0223 O-succinylbenzoate-CoA ligase.
       0.520
Swoo_0207
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sse:Ssed_0224 O-succinylbenzoate-CoA synthase.
       0.520
menH
Alpha/beta hydrolase fold; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
       0.520
menD
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
       0.520
Swoo_0216
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation.
 
    0.475
Swoo_0217
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: mmw:Mmwyl1_3091 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
   
 0.439
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.