STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0212PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psb:Psyr_0007 aliphatic nitrilase. (334 aa)    
Predicted Functional Partners:
Swoo_0211
KEGG: psb:Psyr_0006 putative phenylacetaldoxime dehydratase.
 
   
 0.938
Swoo_4038
PFAM: Amidase; KEGG: vei:Veis_0353 amidase; Belongs to the amidase family.
 
  
 0.931
Swoo_0229
PFAM: Amidase; KEGG: bpa:BPP3587 indole acetimide hydrolase.
 
  
 0.917
Swoo_1875
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sse:Ssed_2765 nitrite reductase (NAD(P)H), large subunit.
  
  
  0.912
Swoo_1130
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_1060 glutamate--putrescine ligase.
    
 0.904
Swoo_2101
PFAM: glutamine synthetase catalytic region; KEGG: sse:Ssed_2532 hypothetical protein.
    
 0.904
Swoo_4643
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I.
    
 0.904
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
     
  0.900
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
  0.900
Swoo_1809
PFAM: acylphosphatase; KEGG: sse:Ssed_2835 acylphosphatase.
     
  0.900
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.