Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0225KEGG: mmw:Mmwyl1_3102 regulatory PhaM protein. (199 aa)    
Predicted Functional Partners:
Swoo_2185
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.729
Swoo_0224
TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: spe:Spro_3078 phenylacetate degradation probable enoyl-CoA hydratase PaaB.
 
   
 0.691
Swoo_0223
PFAM: thioesterase superfamily protein; KEGG: dac:Daci_0569 phenylacetic acid degradation protein PaaD.
 
  
 0.690
Swoo_0220
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: bpt:Bpet1925 phenylacetic acid degradation protein.
 
   
 0.585
Swoo_0219
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bbt:BBta_2867 phenylacetic acid degradation protein PaaC.
 
   
 0.570
Swoo_0221
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: bpt:Bpet1924 putative phenylacetic acid degradation protein.
 
   
 0.569
Swoo_0222
KEGG: pla:Plav_2698 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.569
Swoo_0218
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: reh:H16_B1360 phenylacetic acid degradation protein D.
 
   
 0.544
Swoo_0226
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: dge:Dgeo_1913 phenylacetic acid degradation protein PaaN.
 
   
 0.485
Swoo_0216
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation.
  
  
 0.472
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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