Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0231TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sse:Ssed_0227 cytochrome c family protein. (316 aa)    
Predicted Functional Partners:
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
 
 
 
 0.954
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
 
 
 
 0.879
Swoo_0234
TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_0230 anaerobic dimethyl sulfoxide reductase, B subunit.
  
  
 0.778
Swoo_0233
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0229 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.773
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
 
     0.656
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
     0.615
Swoo_0235
PFAM: cytoplasmic chaperone TorD family protein; KEGG: sse:Ssed_0231 cytoplasmic chaperone TorD family protein.
 
  
 0.604
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
 
 0.584
Swoo_0240
KEGG: spl:Spea_3967 formate-dependent nitrite reductase.
 
 
0.581
Swoo_4111
Nitrate reductase cytochrome c-type subunit (NapB); Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
  
  
 0.576
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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