Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0234TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_0230 anaerobic dimethyl sulfoxide reductase, B subunit. (225 aa)    
Predicted Functional Partners:
Swoo_0233
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0229 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.998
Swoo_0277
KEGG: spl:Spea_3937 conserved hypothetical protein.
     
  0.900
Swoo_0235
PFAM: cytoplasmic chaperone TorD family protein; KEGG: sse:Ssed_0231 cytoplasmic chaperone TorD family protein.
 
  
 0.851
Swoo_4813
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_4421 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.796
Swoo_2376
Hypothetical protein; KEGG: lic:LIC10684 putative cytochrome c.
   
 
 0.782
Swoo_0231
TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sse:Ssed_0227 cytochrome c family protein.
  
  
 0.778
Swoo_3526
TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sse:Ssed_3360 trimethylamine-N-oxide reductase TorA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.770
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
     
 0.739
Swoo_4807
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sse:Ssed_4415 formate dehydrogenase, C subunit, putative.
 
 
 0.724
Swoo_4811
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: spl:Spea_4135 formate dehydrogenase, gamma subunit.
  
 
 0.682
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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