STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0240KEGG: spl:Spea_3967 formate-dependent nitrite reductase. (157 aa)    
Predicted Functional Partners:
Swoo_0242
TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_3965 polysulphide reductase NrfD.
 
  
 0.967
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.856
Swoo_0241
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_3966 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.820
Swoo_4472
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD.
 
  
 0.810
Swoo_4451
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0508 polysulphide reductase NrfD.
 
  
 0.804
Swoo_0048
PFAM: protein of unknown function DUF1488; KEGG: spl:Spea_0041 protein of unknown function DUF1488.
  
     0.683
Swoo_4453
KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein.
 
   
 0.677
Swoo_1767
KEGG: sse:Ssed_2881 hypothetical protein.
  
     0.672
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
 
     0.653
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
     0.649
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.