Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0245TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (203 aa)    
Predicted Functional Partners:
Swoo_3076
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_2475 biopolymer transport protein ExbD/TolR.
 
 
 0.961
Swoo_3077
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2476 MotA/TolQ/ExbB proton channel.
 
 
 0.936
Swoo_3078
PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_2477 MotA/TolQ/ExbB proton channel.
 
 
 0.913
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.858
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.848
Swoo_1165
KEGG: sse:Ssed_1083 major outer membrane lipoprotein, putative.
    
   0.813
Swoo_3079
KEGG: slo:Shew_2478 hypothetical protein.
 
     0.793
Swoo_1886
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_2752 TonB-dependent receptor.
 
 
 0.766
Swoo_3074
SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein.
 
    0.763
Swoo_0230
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3904 TonB-dependent receptor.
 
 
 0.756
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.