Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0249PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0250 Sel1 domain protein repeat-containing protein. (471 aa)    
Predicted Functional Partners:
Swoo_1746
PFAM: Dual specificity protein phosphatase; KEGG: sse:Ssed_2901 dual specificity protein phosphatase.
  
 
   0.769
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.764
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
 
     0.761
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
 
     0.760
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.752
Swoo_0663
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_3872 Sel1 domain protein repeat-containing protein.
  
     0.745
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.738
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.733
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
 
     0.729
Swoo_0884
KEGG: slo:Shew_0759 cytochrome c, putative.
  
     0.719
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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