Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0252PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_3367 methyl-accepting chemotaxis protein. (623 aa)    
Predicted Functional Partners:
Swoo_1638
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sse:Ssed_3046 CheA signal transduction histidine kinase.
 
 0.976
Swoo_0166
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sse:Ssed_0186 CheA signal transduction histidine kinase.
 
 0.973
Swoo_1643
PFAM: CheW domain protein; KEGG: sse:Ssed_3041 CheW protein.
 
 0.954
Swoo_0165
PFAM: CheW domain protein; KEGG: sse:Ssed_0185 CheW protein.
 
 0.940
Swoo_1747
PFAM: response regulator receiver; CheW domain protein; KEGG: sse:Ssed_2899 response regulator receiver modulated CheW protein.
 
 0.940
Swoo_1944
PFAM: response regulator receiver; CheW domain protein; KEGG: sse:Ssed_2678 response regulator receiver modulated CheW protein.
 
 0.935
cheB-2
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.934
Swoo_1596
PFAM: MCP methyltransferase CheR-type; KEGG: sse:Ssed_3088 protein-glutamate O-methyltransferase.
 
 0.931
Swoo_1595
PFAM: response regulator receiver; CheW domain protein; KEGG: slo:Shew_1343 response regulator receiver modulated CheW protein.
 
 0.921
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.916
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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