Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0256KEGG: sse:Ssed_0257 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (703 aa)    
Predicted Functional Partners:
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.915
Swoo_1037
PAS/PAC sensor hybrid histidine kinase; KEGG: sse:Ssed_0987 histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein.
  
 
 0.853
Swoo_0829
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: aba:Acid345_4059 multi-sensor hybrid histidine kinase.
  
 
 0.824
Swoo_4645
KEGG: sse:Ssed_0290 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein.
  
 
 0.815
Swoo_0798
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; KEGG: sse:Ssed_3784 putative sensory transduction system, regulatory protein.
 
 
 0.809
Swoo_1704
Multi-sensor hybrid histidine kinase; KEGG: sse:Ssed_2941 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.809
Swoo_3609
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_3423 GGDEF domain-like protein.
 
   0.796
Swoo_1040
PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: sse:Ssed_0987 histidine kinase.
  
 
 0.788
Swoo_1512
KEGG: sse:Ssed_1381 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.788
Swoo_2684
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: saz:Sama_0619 response regulator receiver protein.
 
 
 
0.770
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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