Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0258PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0259 methyltransferase type 12. (211 aa)    
Predicted Functional Partners:
Swoo_0257
KEGG: sse:Ssed_0258 hypothetical protein.
       0.633
Swoo_2580
KEGG: sse:Ssed_2025 gonadoliberin III-related protein.
 
     0.601
Swoo_2581
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sse:Ssed_2024 alpha-L-glutamate ligase-like protein.
  
     0.527
Swoo_0259
Amidohydrolase; KEGG: shm:Shewmr7_3816 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.414
Swoo_2201
Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: slo:Shew_1873 glucan 1,4-alpha-glucosidase.
   
    0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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