STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0259Amidohydrolase; KEGG: shm:Shewmr7_3816 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. (435 aa)    
Predicted Functional Partners:
Swoo_0260
PFAM: peptidase M16 domain protein; KEGG: sse:Ssed_0261 peptidase M16 domain protein.
       0.620
Swoo_0261
PFAM: peptidase M16 domain protein; KEGG: sse:Ssed_0262 peptidase M16 domain protein.
       0.620
dapD
TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: sse:Ssed_3164 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.451
Swoo_0262
KEGG: sse:Ssed_0263 hypothetical protein.
       0.415
Swoo_0263
KEGG: sse:Ssed_0264 hypothetical protein.
       0.415
Swoo_0258
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sse:Ssed_0259 methyltransferase type 12.
       0.414
Swoo_0158
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_0178 peptidase M14, carboxypeptidase A.
  
     0.409
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.