Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0262KEGG: sse:Ssed_0263 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Swoo_0263
KEGG: sse:Ssed_0264 hypothetical protein.
       0.773
Swoo_1893
KEGG: sse:Ssed_2745 methyl-accepting chemotaxis protein.
  
     0.720
Swoo_0164
PFAM: chemotaxis sensory transducer; KEGG: sse:Ssed_0184 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor.
  
     0.530
Swoo_1888
TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: sse:Ssed_2750 nicotinamide mononucleotide transporter PnuC.
  
     0.521
Swoo_0260
PFAM: peptidase M16 domain protein; KEGG: sse:Ssed_0261 peptidase M16 domain protein.
       0.504
Swoo_0261
PFAM: peptidase M16 domain protein; KEGG: sse:Ssed_0262 peptidase M16 domain protein.
       0.504
Swoo_4405
KEGG: slo:Shew_0400 methylation site containing protein.
  
     0.500
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
  
     0.494
Swoo_1348
KEGG: sse:Ssed_1248 hypothetical protein.
  
     0.457
Swoo_1887
KEGG: sse:Ssed_2751 hypothetical protein.
  
     0.456
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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