Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Swoo_0237 | Swoo_0265 | Swoo_0237 | Swoo_0265 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3970 transcriptional regulator, LysR family. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | 0.728 |
Swoo_0238 | Swoo_0265 | Swoo_0238 | Swoo_0265 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3969 transcriptional regulator, LysR family. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | 0.719 |
Swoo_0265 | Swoo_0237 | Swoo_0265 | Swoo_0237 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3970 transcriptional regulator, LysR family. | 0.728 |
Swoo_0265 | Swoo_0238 | Swoo_0265 | Swoo_0238 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3969 transcriptional regulator, LysR family. | 0.719 |
Swoo_0265 | Swoo_3879 | Swoo_0265 | Swoo_3879 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative. | 0.401 |
Swoo_0265 | trmL | Swoo_0265 | Swoo_0264 | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | RNA methyltransferase, TrmH family, group 2; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.522 |
Swoo_3879 | Swoo_0265 | Swoo_3879 | Swoo_0265 | PFAM: chitin-binding domain 3 protein; KEGG: son:SO_1072 chitin-binding protein, putative. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | 0.401 |
trmL | Swoo_0265 | Swoo_0264 | Swoo_0265 | RNA methyltransferase, TrmH family, group 2; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spl:Spea_3945 transcriptional regulator, LysR family. | 0.522 |