Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0280Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_0278 integral membrane sensor signal transduction histidine kinase. (459 aa)    
Predicted Functional Partners:
Swoo_0281
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0279 two component transcriptional regulator, winged helix family.
 
 0.998
Swoo_2294
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2316 response regulator receiver protein.
 
 0.984
Swoo_1030
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0981 two component transcriptional regulator, winged helix family.
 
 
 0.861
Swoo_3978
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbn:Sbal195_3690 two component transcriptional regulator, winged helix family.
 
 
 0.860
Swoo_3920
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pat:Patl_3411 two component transcriptional regulator, winged helix family.
 
 
 0.851
Swoo_1704
Multi-sensor hybrid histidine kinase; KEGG: sse:Ssed_2941 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.839
Swoo_0660
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3875 two component transcriptional regulator, winged helix family.
 
 
 0.838
Swoo_3534
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3367 two component transcriptional regulator, winged helix family.
 
 
 0.834
Swoo_4252
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0712 two component transcriptional regulator, winged helix family.
 
 
 0.834
Swoo_3762
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0815 two component transcriptional regulator, winged helix family.
 
 
 0.830
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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