STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0282PFAM: protein of unknown function Spy-related; KEGG: sse:Ssed_0280 protein of unknown function, Spy-related. (154 aa)    
Predicted Functional Partners:
priB
Single-strand binding protein/Primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.700
Swoo_0443
PFAM: amino acid-binding ACT domain protein; KEGG: sse:Ssed_4164 acetolactate synthase small subunit.
  
     0.668
Swoo_0280
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_0278 integral membrane sensor signal transduction histidine kinase.
 
   
 0.658
Swoo_1799
Inosine kinase; PFAM: PfkB domain protein; KEGG: sse:Ssed_2845 inosine kinase.
  
     0.651
htpX
HtpX domain protein; PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: sse:Ssed_2770 HtpX domain protein; Belongs to the peptidase M48B family.
  
  
 0.591
Swoo_1808
PFAM: protein of unknown function UPF0227; KEGG: sse:Ssed_2836 protein of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.584
Swoo_3701
PFAM: protein of unknown function DUF1451; KEGG: sse:Ssed_3478 protein of unknown function DUF1451.
  
     0.570
Swoo_2271
PFAM: CopG domain protein DNA-binding domain protein; KEGG: sse:Ssed_2336 CopG domain protein DNA-binding domain protein.
  
     0.566
Swoo_0283
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sse:Ssed_0281 cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.562
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
   
 0.515
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.