STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0286PFAM: regulator of RNA polymerase sigma(70) subunit Rsd/AlgQ; KEGG: sse:Ssed_0439 regulator of RpoD, Rsd/AlgQ; Belongs to the Rsd/AlgQ family. (155 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.867
rpoS
RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
 
 0.861
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.822
Swoo_2192
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sse:Ssed_2414 phosphocarrier, HPr family.
    
 
 0.778
Swoo_3120
PFAM: protein of unknown function DUF1282; KEGG: sse:Ssed_1534 protein of unknown function DUF1282.
  
     0.656
Swoo_4406
KEGG: slo:Shew_0399 methylation site containing protein.
  
     0.480
Swoo_1041
PFAM: UspA domain protein; KEGG: sse:Ssed_0988 UspA domain protein.
  
   
 0.475
Swoo_2784
KEGG: sse:Ssed_1811 hypothetical protein.
  
     0.446
Swoo_1642
PFAM: CheW domain protein; KEGG: sse:Ssed_3042 CheW protein.
  
     0.429
Swoo_2144
PFAM: glutaredoxin 2; KEGG: spl:Spea_1947 glutaredoxin 2.
  
     0.418
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.