Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_0291KEGG: slo:Shew_3417 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Swoo_0290
KEGG: shm:Shewmr7_0668 hypothetical protein.
 
    
0.848
Swoo_0288
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfr:Sfri_0484 periplasmic sensor signal transduction histidine kinase.
 
 
   0.820
Swoo_4433
KEGG: sfr:Sfri_3594 hypothetical protein.
  
     0.710
Swoo_1509
KEGG: sse:Ssed_1368 conserved hypothetical cytosolic protein.
  
     0.688
Swoo_2899
KEGG: sse:Ssed_1695 hypothetical protein.
  
     0.622
Swoo_0289
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein.
 
     0.603
Swoo_3907
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein.
  
     0.552
Swoo_4101
KEGG: sbn:Sbal195_4665 hypothetical protein.
  
     0.522
Swoo_0775
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_3808 hypothetical protein.
  
     0.445
Swoo_1760
KEGG: sse:Ssed_2888 hypothetical protein.
  
     0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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