Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0307KEGG: shn:Shewana3_2918 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Swoo_0306
AAA ATPase; KEGG: sbn:Sbal195_0587 AAA ATPase.
       0.789
Swoo_0310
PFAM: integrase family protein; KEGG: vpa:VP2909 hypothetical protein.
       0.657
Swoo_0311
PFAM: integrase family protein; KEGG: vpa:VP2910 hypothetical protein.
       0.649
Swoo_0309
KEGG: vpa:VP2908 hypothetical protein.
       0.647
Swoo_0308
KEGG: vpa:VP2907 hypothetical protein.
       0.625
Swoo_0304
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: gme:Gmet_0675 type III restriction enzyme, res subunit.
       0.404
Swoo_0305
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase.
       0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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