STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0309KEGG: vpa:VP2908 hypothetical protein. (898 aa)    
Predicted Functional Partners:
Swoo_0310
PFAM: integrase family protein; KEGG: vpa:VP2909 hypothetical protein.
       0.787
Swoo_0308
KEGG: vpa:VP2907 hypothetical protein.
       0.786
Swoo_0311
PFAM: integrase family protein; KEGG: vpa:VP2910 hypothetical protein.
       0.782
Swoo_0307
KEGG: shn:Shewana3_2918 hypothetical protein.
       0.647
Swoo_0306
AAA ATPase; KEGG: sbn:Sbal195_0587 AAA ATPase.
       0.635
Swoo_0312
PFAM: type II secretion system protein; KEGG: sbn:Sbal195_4061 type II secretion system protein.
       0.435
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.