STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0313TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0425 type IV-A pilus assembly ATPase PilB. (569 aa)    
Predicted Functional Partners:
Swoo_0312
PFAM: type II secretion system protein; KEGG: sbn:Sbal195_4061 type II secretion system protein.
 
 
 0.980
Swoo_4413
PFAM: type II secretion system protein; KEGG: sse:Ssed_0548 type II secretion system protein.
 
 
 0.929
Swoo_4732
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sse:Ssed_4356 general secretion pathway protein F.
 
 
 0.929
Swoo_0303
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.903
Swoo_4726
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.813
Swoo_0314
General secretion pathway protein; KEGG: sdn:Sden_3388 methylation.
 
  
 0.793
Swoo_0339
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_4266 type IV pilus secretin PilQ.
 
 
 
 0.782
Swoo_0335
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sse:Ssed_4270 type IV pilus assembly protein PilM.
 
 
 
 0.768
Swoo_4731
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: spl:Spea_0147 general secretion pathway protein G.
 
 
 0.744
Swoo_1818
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sse:Ssed_2827 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.632
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.