Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0337PFAM: Pilus assembly protein PilO; KEGG: sse:Ssed_4268 pilus assembly protein, PilO. (205 aa)    
Predicted Functional Partners:
Swoo_0336
PFAM: Fimbrial assembly family protein; KEGG: sse:Ssed_4269 fimbrial assembly family protein.
 
 
 0.998
Swoo_0338
PFAM: Pilus assembly protein PilP; KEGG: sse:Ssed_4267 methyl-accepting chemotaxis sensory transducer.
 
  
 0.995
Swoo_0335
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sse:Ssed_4270 type IV pilus assembly protein PilM.
 
 
 0.994
Swoo_0339
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_4266 type IV pilus secretin PilQ.
 
 
 0.992
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
 
   0.907
Swoo_1542
KEGG: sse:Ssed_1430 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   
 0.862
Swoo_1299
Type IV pilus biogenesis protein PilE; KEGG: sdn:Sden_2715 methylation.
 
  
 0.843
Swoo_4420
KEGG: sse:Ssed_0541 fimbrial assembly family protein.
  
 
 0.840
Swoo_1984
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_2646 type IV pilus assembly PilZ.
  
   
 0.813
Swoo_1333
KEGG: sse:Ssed_1233 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.790
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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