Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swoo_0339TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_4266 type IV pilus secretin PilQ. (682 aa)    
Predicted Functional Partners:
Swoo_0336
PFAM: Fimbrial assembly family protein; KEGG: sse:Ssed_4269 fimbrial assembly family protein.
 
 
 0.996
Swoo_0338
PFAM: Pilus assembly protein PilP; KEGG: sse:Ssed_4267 methyl-accepting chemotaxis sensory transducer.
 
 
 0.996
Swoo_0335
TIGRFAM: type IV pilus assembly protein PilM; KEGG: sse:Ssed_4270 type IV pilus assembly protein PilM.
 
 
 0.994
Swoo_0337
PFAM: Pilus assembly protein PilO; KEGG: sse:Ssed_4268 pilus assembly protein, PilO.
 
 
 0.992
Swoo_0039
PFAM: Peptidoglycan-binding LysM; KEGG: sse:Ssed_0036 peptidoglycan-binding LysM.
 
 
 
 0.963
Swoo_0312
PFAM: type II secretion system protein; KEGG: sbn:Sbal195_4061 type II secretion system protein.
 
 
 
 0.878
Swoo_0314
General secretion pathway protein; KEGG: sdn:Sden_3388 methylation.
 
   
 0.857
Swoo_1299
Type IV pilus biogenesis protein PilE; KEGG: sdn:Sden_2715 methylation.
 
   
 0.838
Swoo_4420
KEGG: sse:Ssed_0541 fimbrial assembly family protein.
  
 
 0.829
Swoo_1333
KEGG: sse:Ssed_1233 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.821
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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