STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0362PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sde:Sde_1708 oxidoreductase, Gfo/Idh/MocA family. (396 aa)    
Predicted Functional Partners:
Swoo_0363
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: sde:Sde_1707 hypothetical protein.
 
  
 0.980
Swoo_0365
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3701 hypothetical protein.
 
  
 0.936
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
 
    0.880
Swoo_0366
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
 
     0.830
Swoo_0367
PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase.
 
     0.730
Swoo_0368
Hypothetical protein; KEGG: sru:SRU_2528 Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.653
Swoo_0361
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pat:Patl_1157 transcriptional regulator, AraC family.
 
     0.632
Swoo_3665
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC_0785 hypothetical protein.
 
     0.614
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: spl:Spea_0757 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.604
Swoo_1683
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sse:Ssed_0107 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.589
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.