STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0366PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Swoo_0368
Hypothetical protein; KEGG: sru:SRU_2528 Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.950
Swoo_0367
PFAM: glucose-methanol-choline oxidoreductase; KEGG: sus:Acid_7382 glucose-methanol-choline oxidoreductase.
 
     0.942
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.940
Swoo_0365
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cps:CPS_3701 hypothetical protein.
 
     0.850
Swoo_0362
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sde:Sde_1708 oxidoreductase, Gfo/Idh/MocA family.
 
     0.830
Swoo_0364
PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_1706 conserved hypothetical protein-signal peptide and transmembrane prediction.
 
     0.807
Swoo_0363
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: sde:Sde_1707 hypothetical protein.
 
     0.768
Swoo_1749
Oxidoreductase domain protein; Glycosidase.
 
     0.737
Swoo_1314
KEGG: sse:Ssed_1214 hypothetical protein.
  
     0.651
Swoo_3660
PFAM: sulfatase; KEGG: pat:Patl_1842 sulfatase.
  
    0.555
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.