STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0380PFAM: protein of unknown function DUF1212; KEGG: sse:Ssed_4220 protein of unknown function DUF1212. (406 aa)    
Predicted Functional Partners:
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
  
     0.540
Swoo_0381
KEGG: sse:Ssed_4219 hypothetical protein.
       0.504
Swoo_1524
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sse:Ssed_1411 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
 
     0.473
Swoo_1007
PFAM: protein of unknown function DUF1212; KEGG: sse:Ssed_0957 protein of unknown function DUF1212.
  
  
 0.463
Swoo_1008
KEGG: sse:Ssed_0958 hypothetical protein.
  
  
 0.463
pepQ
Peptidase M24; Splits dipeptides with a prolyl residue in the C-terminal position.
 
     0.451
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
  
     0.437
Swoo_2904
KEGG: sse:Ssed_1693 hypothetical protein.
  
     0.435
Swoo_1047
PFAM: NADPH-dependent FMN reductase; KEGG: sse:Ssed_0994 NADPH-dependent FMN reductase.
  
     0.430
Swoo_4619
KEGG: sse:Ssed_0301 hypothetical protein.
  
     0.430
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.