Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0392KEGG: sse:Ssed_4205 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Swoo_0391
KEGG: ppr:PBPRB0547 hypothetical protein.
       0.752
Swoo_1027
KEGG: sse:Ssed_0978 hypothetical protein.
  
    0.574
Swoo_2992
PFAM: protein of unknown function DUF1458; KEGG: sse:Ssed_3527 protein of unknown function DUF1458.
  
    0.564
Swoo_0393
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: spl:Spea_0284 peptidase S9 prolyl oligopeptidase active site domain protein.
       0.526
Swoo_1651
PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein.
   
    0.513
Swoo_1699
PFAM: polysaccharide export protein; KEGG: sse:Ssed_2946 polysaccharide export protein.
   
    0.487
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.454
Swoo_1810
KEGG: sse:Ssed_2834 hypothetical protein.
  
     0.439
Swoo_1340
KEGG: sse:Ssed_1240 hypothetical protein.
  
    0.437
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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