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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0418PFAM: Radical SAM domain protein; KEGG: shn:Shewana3_3560 radical SAM domain protein. (431 aa)    
Predicted Functional Partners:
Swoo_3807
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO_A0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative.
  
    0.962
Swoo_0419
PFAM: sulfatase; KEGG: vvy:VVA0661 arylsulfatase A.
 
 
 0.918
Swoo_3651
PFAM: sulfatase; KEGG: ypi:YpsIP31758_1263 sulfatase.
 
 
 0.815
Swoo_3655
PFAM: sulfatase; KEGG: sus:Acid_1241 sulfatase.
 
 
 0.812
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
 
 
 0.810
Swoo_3661
PFAM: sulfatase; KEGG: rba:RB1477 arylsulfatase.
 
 
 0.804
Swoo_3654
PFAM: sulfatase; KEGG: rba:RB6599 arylsulfatase A.
 
 
 0.800
Swoo_3659
PFAM: sulfatase; KEGG: bvu:BVU_1159 sulfatase.
 
 
 0.799
Swoo_2408
PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
 
 
 0.777
Swoo_3650
PFAM: sulfatase; KEGG: rba:RB6599 arylsulfatase A.
 
 
 0.777
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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