Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_0419PFAM: sulfatase; KEGG: vvy:VVA0661 arylsulfatase A. (513 aa)    
Predicted Functional Partners:
Swoo_2400
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
 
  
 
0.930
Swoo_3651
PFAM: sulfatase; KEGG: ypi:YpsIP31758_1263 sulfatase.
  
  
 
0.929
Swoo_0418
PFAM: Radical SAM domain protein; KEGG: shn:Shewana3_3560 radical SAM domain protein.
 
  
 0.886
Swoo_3657
PFAM: sulfatase; KEGG: rba:RB4017 probable sulfatase.
 
     0.771
Swoo_3652
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2.
 
     0.747
Swoo_1024
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0975 secretion protein HlyD family protein.
  
     0.587
Swoo_0420
KEGG: mkm:Mkms_2796 hypothetical protein.
       0.547
Swoo_0421
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_B3849 helix-turn-helix, fis-type.
 
     0.539
Swoo_2854
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_4566 tetratricopeptide TPR_2 repeat protein.
  
     0.455
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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