STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0435Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (178 aa)    
Predicted Functional Partners:
Swoo_3433
PFAM: regulatory protein TetR; KEGG: shn:Shewana3_2864 transcriptional regulator, TetR family.
 
     0.648
Swoo_0436
KEGG: cps:CPS_4903 hypothetical protein.
       0.551
Swoo_0437
Transcriptional antiterminator, Rof; PFAM: Modulator of Rho-dependent transcription termination; KEGG: vvy:VVA1468 hypothetical protein.
       0.496
Swoo_4056
PFAM: regulatory protein TetR; KEGG: sse:Ssed_3643 transcriptional regulator, TetR family.
 
     0.482
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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