Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Swoo_0437Transcriptional antiterminator, Rof; PFAM: Modulator of Rho-dependent transcription termination; KEGG: vvy:VVA1468 hypothetical protein. (81 aa)    
Predicted Functional Partners:
Swoo_0436
KEGG: cps:CPS_4903 hypothetical protein.
  
    0.730
Swoo_3986
PFAM: copper resistance lipoprotein NlpE; KEGG: sse:Ssed_3687 lipoprotein.
  
     0.583
Swoo_3996
KEGG: spl:Spea_3468 conserved hypothetical protein.
  
     0.547
Swoo_0435
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.496
Swoo_3162
PFAM: protein of unknown function DUF1289; KEGG: sse:Ssed_1507 protein of unknown function DUF1289.
  
     0.484
Swoo_0438
KEGG: sse:Ssed_4170 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein.
       0.462
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
    0.447
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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