STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0454AAA ATPase; KEGG: fjo:Fjoh_4877 AAA ATPase. (606 aa)    
Predicted Functional Partners:
Swoo_0501
PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit.
  
  
 0.661
Swoo_0455
KEGG: dps:DP2995 hypothetical protein.
       0.512
Swoo_0502
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: sbm:Shew185_1977 N-6 DNA methylase.
  
  
 0.507
Swoo_0298
PFAM: permease; KEGG: sse:Ssed_0446 permease.
   
    0.410
Swoo_1498
PFAM: permease; KEGG: vfi:VFA0175 hypothetical membrane spanning protein.
   
    0.410
Swoo_4829
KEGG: sse:Ssed_4436 hypothetical protein.
   
    0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.