Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_0459PFAM: protein of unknown function DUF124; KEGG: hch:HCH_01583 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Swoo_0458
PFAM: protein of unknown function DUF124; KEGG: hch:HCH_01584 hypothetical protein.
 
    
0.785
Swoo_0457
PFAM: protein of unknown function DUF124; KEGG: hch:HCH_01585 hypothetical protein.
 
    
0.714
Swoo_0456
PFAM: peptidase M48 Ste24p; KEGG: hch:HCH_01586 putative Zn-dependent protease, contains TPR repeats.
       0.587
Swoo_0211
KEGG: psb:Psyr_0006 putative phenylacetaldoxime dehydratase.
  
     0.415
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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