STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_0463PFAM: Inner membrane CreD family protein; KEGG: sse:Ssed_4153 inner membrane protein, putative. (448 aa)    
Predicted Functional Partners:
Swoo_0462
PFAM: phosphoesterase PA-phosphatase related; KEGG: sse:Ssed_4154 phosphoesterase, PA-phosphatase related.
 
     0.560
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
  
     0.501
Swoo_3319
PFAM: von Willebrand factor type A; KEGG: sbm:Shew185_1105 von Willebrand factor type A.
  
     0.470
Swoo_0464
PFAM: protein of unknown function DUF526; KEGG: sse:Ssed_4151 protein of unknown function DUF526.
       0.444
Swoo_3144
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sse:Ssed_2787 glyoxalase family protein.
  
     0.438
Swoo_1032
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_0983 MltA-interacting MipA family protein.
  
     0.437
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.433
Swoo_1191
KEGG: stm:STM0409 hypothetical protein.
  
     0.422
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.412
Swoo_4250
PFAM: glycosyl transferase family 39; KEGG: sse:Ssed_0714 hypothetical protein.
   
    0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.